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53-4415-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24136717 [Map]; Strand: c
      • AT5G59940.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -695; Region: promoter
    Flanking Genome Sequence: 53-4415-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC TGACGGGAAC AATAACATAA GTCTCCAAAG 
    TAACTGTATC GATCGATTTA CTGGTATAGA ACCATTTAAT TGGATCTAAC 
    TCTCTCTCGC ATGTATCACA CCAATAATTT TCATAAGATT AAATAGGGGA 
    AGAATTGAGA AACCACCGTA AAAGATACAC TCATCAATTT AGAATAAAAC 
    ATCAAAGCCT TTTCCTCTCA CATGAAAAAT CGTAGCAATG CCTCACAGAT 
    AATATGAGAA ATGCATCAGA AAACATGAAC GTGAACAAAA AAAATATACA 
    ATGTTACCCT CACGAAACTT AAGGATTACA GAAACCTTGC ATCGAGAGTG 
    ACACCGGCTG CACATTGGTC GAGTGTTGTG ATTATTGAAA ACCACCTCCA 
    CGGTATATAC CCGGTAGTCA ATGGTGCATC CTGGCATGAG ACGTGAGAAA 
    TCTCCTAGTA CGCATTCCAC ATGCAATGTG CCTCCACAAC CAAAGCATGT 
    ATAGAACCAT TTACTTGGAT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24136711 [Map]; Strand: c
      • AT5G59940.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -701; Region: promoter
    Flanking Genome Sequence: 53-4415-1 - 3-prime edge 
    ATTGAAAACA GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    TCTCCCGTTC ATGTTTTGTG AAGTACTTTG CAATAAACCG GTGGATCTTT 
    CTTGGTGGTT TCACACTTGA AAAAATATTC GCGGTGAACC TTTATTTACC 
    GCTTTTATTC CAGTTAATTA GAATTTGTCA CCTAATAAAA AAAAAAAAAT 
    TNNTTNAATT NNAAAANNTT TTTNNNCAAA CGGANAAAAC CATNTTTNNC 
    CNGATTNNNG GGCGGGNGGA NAAANCCNTC CCCNCCNGCC NTNGAACATN 
    TNNTNNGNNA NNACTNTTNN CCNTTCNCTA NNCTTTTNNA AAAACCNANN 
    GGNGGANCCC CTTTTNNAAN ANCNNCTTTN GNCAATCAAT AAAAANCCAA 
    AANCTAAATC NATTCNTNTN AAANAATNTN GCTAAAATNT AATNTCNANC 
    CCNNCANTAN CANCNNCNNC NNGTNGGNCA ANGNAANNTT TNNNGNAAAN 
    ANANNGCCAA NGCTTTCAAA NCNNNATTTN NAAGTTNAAA ATNTTTTTNT 
    AAAANGTAAA ANCTTTTTTN GGANCAAATN CNAATNTTTN NATTTNNNCT 
    TTAAAAAAAA AANTTTNNAA NCCNGATNNG GAAACNNTGT NTNANNTTTG 
    TNGGAAGTTG GANGGGATNA AAATTTTTTT AACCNCCACG TTNAGNTTCC 
    ATTTTCCCTA AANAAAAANA AAAAAAAAAN AATCCCTTTC CCTTTTTTCN 
    TCCCTGGGAT NCAGGAACC

AT5G59940.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR