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53-3847-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24145220 [Map]; Strand: c
      • AT5G59960.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-3847-1 - 5-prime edge 
    CAGAGGAGAC CCCATTCATT GATTGATTGA ATAAAATAAT TCGTAACGAA 
    GAAGCAATCA TTATCATTCT CTCGATTTCT CATACTAGCA GACAATAGAT 
    CGACGCTGTT GATCGCATGT GGTAGTTCCT TTTTGGATCA GTGGTTTTTG 
    AAATGGAGAA AGTTTCGTCG CCGTCTTCCT CTTTTTCACG GAGGTCTGCT 
    TATCTTGAAG CTCTTACACA AGAGATTAAG AAGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24145336 [Map]; Strand: c
      • AT5G59960.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -3; Region: promoter
    Flanking Genome Sequence: 53-3847-1 - 3-prime edge 
    CTCCTCTGGA TTTAAAAATT AGTCGTAATT AGGCGTGAAC TTCTTTTCTC 
    TTTTGCTACT GTGAACTCCG ATAAAGACAC GAGAGGAAAA AACGAAGATA 
    TTGTTTGTTT CAAAACGACG TCGTTGCATT CTGGATCAGA GAGATGACAG 
    TGTTGGTTGG CNTGAAGACA CGTGTACCTA TTCAGGCCCC TCTTTATTTT 
    TCTTTTAATC TTTTTTTTTT TNTAAAAAAA ATNANCGTCG TNGGGGTAAA 
    ATANTTTCGG AANGAAATNG ATNAANGNCG TTTNGTNTNT TTTNAAAATT 
    NGTTNTNCAN TNCNACANTT TNTTCNTNTC NCCTTNTTTT AAATNNGTTT 
    CCAATTNTNN AAATNGGANN ATTCGTNCCA TNAAATNCAA ANANCCCTTA 
    AAANNCCNCT NTNTCCTTTT TAAAAGGGAT CAANACCTCN TTNTCCACTN 
    CCNCTCGGGG CAAANNGAAA NCTTTTTAAA NTCACCCCAA ANTAGNGGGA 
    ANCTAAANTT TNCCCCCTAN TGAGTAAAGT NGGTAAAAGC TN

AT5G59960.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR