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53-3153-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24442996 [Map]; Strand: c
      • AT5G60760.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 709; Region: intergenic
      • AT5G60770.1 - [+] show detail - nitrate transporter 2.4
        Distance: -1400; Region: intergenic
    Flanking Genome Sequence: 53-3153-1 - 5-prime edge 
    GTTGTGATGA TGTAATCAGA TCCCTAATTA TGCTTAGGAA GATTGTAACA 
    GCAATAACAG TTGTACCTTC ACAAATAAAA ACCTTTTTTG TCCTTAAGAA 
    ACTCCAGAGG AAACGTGCAA CAGTGCTATT GTTTGATCTT TTTTACCTTT 
    AACATTATAT TAAGTCCATT ATTCTTAATT CGTAATGAGT TAATGACTTT 
    TATGTTTTGT GAACGAGAAC TTTTTTCTAG TTAGCACTTT TGTGCTTTAG 
    TTTTTTTTTT AAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25702033 [Map]; Strand: w
      • AT1G68500.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-3153-1 - 3-prime edge 
    ATCAGCAGTC CCTTCTTCCT CCATATCTTT TCTCTGTCTC TTCATGTAAA 
    AGTGTTAGTT GTGATTGATG TGATCTTAAA GATGAAGAGT GAAGTCAAGA 
    GGTTTATTTA TAAGGGAGAG GTTGAGGAAG TAGTTAGTGG AAGAAGACAT 
    ATATGAGAGT TGGGTTTAGA GAGAGACGTG AAG

AT1G68500.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25422.1); Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60760.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G45090.1); Has 1216 Blast hits to 969 proteins in 195 species: Archae - 93; Bacteria - 85; Metazoa - 220; Fungi - 67; Plants - 127; Viruses - 43; Other Eukaryotes - 581 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60770.1

Model type
Protein coding
Short Description
nitrate transporter 2.4
Curator Summary
member of High affinity nitrate transporter family
Computational Description
nitrate transporter 2.4 (NRT2.4); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: transmembrane transport; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 2:1 (TAIR:AT1G08090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR