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53-2555-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24050914 [Map]; Strand: w
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: -638; Region: promoter
    Flanking Genome Sequence: 53-2555-1 - 5-prime edge 
    AACGAATTTA CTTGTGGCTT TGACATGTCG TGTGCTCTGT TTGTATTTGT 
    GAGTGCCGGT TGGTAATTAT TTTTGTTAAT GTGATTTTAA AACCTCTTAT 
    GTAAATAGTT ACCTTTATCT ATTGAAGTGT GTTCTTGTGG TCTATAGTTT 
    CTCAAAGGGA AATTAAAATG TTGACATCCC ATTTACAATT GATAACTTGG 
    TATACACAAA CTTTGTAAAT TTGGTGATAT TTATGGTCGA AAGAAGGCAA 
    TACCCATTGT ATGTTCCAAT ATCAATATCA ATACGATAAC TTGATAATAC 
    TAACATATGA TTGTCATTGT TTTTCCAGTA TCAATATACA TTAAGCTACT 
    ACAAAATTAG TATAAATCAC TATGTTATAA ATCTTTTTCG GTTGTAACTT 
    GTAATTCGTG GGTTTTTAAA ATAAAAGCAT GTGAAAATTT TCAAATAATG 
    TGATGGCGCA ATTTTATTTT CCGAGTTCCA AAATATTGCC GCTTCATTAC 
    CCTAATTTGT GGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24050777 [Map]; Strand: w
      • AT5G59680.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon13 (CDS)
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: -775; Region: promoter
    Flanking Genome Sequence: 53-2555-1 - 3-prime edge 
    ATTACAATTG TGTCACTTGC AGCACAAACT ATCTTGCTCT GGGAATCATC 
    TCAGCATCAA AGATCATGCT CACTTCAGGG GAACTTAGTG TATCCATGCC 
    TCGACTCATA TTTCTCCTCG AGTTTTCAGA CACGAGACAC TCTTTTAGTT 
    CAATAACAAC ATGAGACATG GTTGGTCGTC TTGCTGAGGT AGGATCCGCG 
    CACGACATTG CTAGCTCAAG AGCTCTCCAC GCAGAACGAG AATCATAATC 
    ACCGTTAAGC TTTAGATCCA TGATCTTAGC AATATCTCCT CCGTTAAGCT 
    CAGACCCTAC CCATTGTGTT ATGTGAGACT TTCTGCGGTT TCGATCAATC 
    ACTGCTTGGT TTGTGATCAT CTCTAATAAA ACAATCCCGA AACTGTAAAC 
    ATCACTTTTC TCACTCAACC GACTTGTATG GTAATATCTA CAAGGAAAGC 
    GAATGGTATA TACTCTTTAA GTATCGACGA AAGAAAAGAA AAGTTTCAGC 
    ACTGTTAATT GATTCTTACT CTGGATCAAG GTAACCAGGA GTACCAGCAA 
    TCACCGTCGA AACATGAGAT TCACCTCCAA CAGGGAAAGA TCTCGAGAGA 
    CCAAAATCAG CAAGTTTGGC CTTATAATGC T

AT5G59680.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G59650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59690.1

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: thylakoid; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR