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52-0197-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17389143 [Map]; Strand: w
      • AT4G36900.1 - [+] show detail - related to AP2 10
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0197-1 - 5-prime edge 
    GCGGTGGCGA CGAGGAAGAG AGATAAGCCG TATAAAGGGA TAAGGATGAG 
    GAAGTGGGGG AAGTGGGTGG CGGAGATAAG AGAGCCTAAT AAAAGGTCAA 
    GGATCTGGCT TGGCTCTTAC TCTACTCCTG AAGCGGCNGG CGCGTGCNTT 
    ACGACACNGG CGGTGTTTTA TCTCCGAGGT CCTTCTGCTC GGCTTAACTT 
    CCCGGAGCTT TTAGCCGGAG TGACGGTGAC GGGAGGAGGC GGAGGAGGAG 
    TGAACGGTGG TGGAGATATG TCGGCGGCGT ATATAAGGAG AAAAGCGGCG 
    GAGGTTGGAG CACAAGTGGA TGCGTTAGAA GCGGCGGGGG CGGGAGGGAA 
    TCGTCATCAT CATCATCATC AACATCAACG TGGTAATCAT GATTACGTAG 
    ATAATCATAG TGATTATCGT ATTAATGATG ATCTTATGGA GTGTAGTAGT 
    AAAGAAGGGT TTAAGAGGTG TAATGGATCG TTGGAACGGG TTGATTTAAA 
    CAAATTACCC GATCCGGAAA CTTCAGATGA CGATTAGGAA AGCAAAAAAT 
    AGAAACAAAT AATAGTATCG ATTTGTTTTT CACTTTTCGT TAAGTTTGTT 
    CTTCCTTCAT CCAAACAAAA AAAAAANTTN TCCAAGGGAA AATTAAAAAA 
    TGTTNGNNTT TTATTGCCCG GGAGGTTGCT TAANNTTGCC CCCCCTCCTC 
    CATAAATTTG NTTTN

AT4G36900.1

Model type
Protein coding
Short Description
related to AP2 10
Curator Summary
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.10). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.1.
Computational Description
related to AP2 10 (RAP2.10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DREB and EAR motif protein 3 (TAIR:AT2G23340.1); Has 5719 Blast hits to 5612 proteins in 252 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 5703; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR