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15-0081-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6016419 [Map]; Strand: w
      • AT1G17495.1 - [+] show detail - transposable element gene
        Distance: -2677; Region: intergenic
      • AT1G17500.1 - [+] show detail - ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase famil...
        Distance: -2338; Region: intergenic
    Flanking Genome Sequence: 15-0081-1 - 5-prime edge 
    GACGCCACTA TGTAAGTACT CTCTCACGTT TTTATATATG GCCCGTTCGA 
    TTGCTTAACG ACCCTAAATT GTATTTCTGT GGAAAAGTCA AACAAATCAA 
    AAAGGCCAAT GCTAGATGTT TAGGTGTAAT AACAATTCTC TCTAATTACA 
    TTACAAGGTT TTGTCTGAAC TCCGAATCAT GTGCATCTTT ATCTTATCTT 
    ATAAAATTCT AAAAAATATA TCGGCTATAA GAGGACAGTG TTATTACCTC 
    CTATATAATT ACACTGTTTT CCATGTTACC ATGTTTAATC AATATAACAA 
    CCTTTGTTAT TTTCTCATTT TTTATTATGA TAATTTTGGN TTTAATATTG 
    ATTGCATAAA CAGAAACCAA CTACTGTATA AACTAATGAA GGGATATTAT 
    ATATTTATAT AAAGGGTCGA AGAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6016303 [Map]; Strand: w
      • AT1G17495.1 - [+] show detail - transposable element gene
        Distance: -2561; Region: intergenic
      • AT1G17500.1 - [+] show detail - ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase famil...
        Distance: -2454; Region: intergenic
    Flanking Genome Sequence: 15-0081-1 - 3-prime edge 
    GTGGCGTCCC ATAACTATTA TCCATTTAAA GCATTTTTTG TTTCAACATG 
    CATGAGTTGG ATATATTTTT TAATTGTATA CGTTTATAGT ATGCATTTCA 
    GTTTCATATG GGTATGTCGC CCTGTGATCA TAATGTGACA AAACAAAAGG 
    ACGACACCCA TATTGATGAT GAAGATTCAA AGAGTTATTA AATTTCATTT 
    ATTAAACTAC TGTTCCTTTG ATTGATATAT AGTGGCTATT ATATACGTTT 
    CATTTTAATT TTATATTTAT TTAGAATTTT TCATTTTATC ATTTCCACGA 
    AATGGTGATT GTACCACCGT ACGTAGTCGT ATGCTATTAC TGTACACTTT 
    CCTCCCACAA CGATTAAAGT ATAAAACTAC AATTTAAATG TTTTAACTTG 
    TATAACAAGT CTATTTTTAA CACTCCATTT GTTTGATTTT GGTCAGATGA 
    CTCAGATCAT TATTTTAACT CCATATCTTT AAGAATCAAA GCATAGTGCG 
    TACCCGTAAC TAGTAGTATG AAAATTATAT CAAAACGCAA ATAAAAATCT 
    ATTGCTCTCG AACAAAAACA TAACAGTAGT AAATTACGTA CGACCACTTA 
    TACTCAAATA CACCTACAAA TGACTACCGT GAGTGGTCAT CCAAGTGATT 
    TATATATGAA AGACAAATTN TATAAACTCA TATAATAATG ATCACGTATA 
    TCAAAATCGA ATTATAACAT TATG

AT1G17495.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.7e-213 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT1G17500.1

Model type
Protein coding
Short Description
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
Computational Description
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, ATP biosynthetic process, phospholipid transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G72700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR