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12-3754-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4349022 [Map]; Strand: w
      • AT1G12750.1 - [+] show detail - RHOMBOID-like protein 6
        Distance: -695; Region: promoter
      • AT1G12750.2 - [+] show detail - RHOMBOID-like protein 6
        Distance: -694; Region: promoter
      • AT1G12750.3 - [+] show detail - RHOMBOID-like protein 6
        Distance: -694; Region: promoter
      • AT1G12760.1 - [+] show detail - Zinc finger, C3HC4 type (RING finger) family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G12760.2 - [+] show detail - Zinc finger, C3HC4 type (RING finger) family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-3754-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATAGAG ACCTGTGGTG GTGCTTGATA TCGTTTGGAA 
    TCTGGCTTTT GTTTCGGTTG CTACGGCTAT TTTGGTGATG AGCCGGAAAG 
    AACATCCGAT TATGCCGCTT AGAGTTTGGC TTTTGGGGTA TGCNTTTGCA 
    ATGCAGTGTT GCATATGGTT TGTGTCTGTG TTGAGTATCG GAGGAGGAAC 
    AGGAGGAGAA CCAATAGGAC GACGACGACG ACTCCTCCAC GGTCACGTTC 
    TTCTTCTTCC TCTTCATCTT CTTCTTCCTT GGAGGAAGAA GCT

AT1G12750.1

Model type
Protein coding
Short Description
RHOMBOID-like protein 6
Computational Description
RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1); Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138; Bacteria - 3818; Metazoa - 537; Fungi - 159; Plants - 344; Viruses - 0; Other Eukaryotes - 1276 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12750.2

Model type
Protein coding
Short Description
RHOMBOID-like protein 6
Computational Description
RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1); Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138; Bacteria - 3818; Metazoa - 537; Fungi - 159; Plants - 344; Viruses - 0; Other Eukaryotes - 1276 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12750.3

Model type
Protein coding
Short Description
RHOMBOID-like protein 6
Computational Description
RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1).
Link
InterPro Scan - TAIR

AT1G12760.1

Model type
Protein coding
Short Description
Zinc finger, C3HC4 type (RING finger) family protein
Computational Description
Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1); Has 9873 Blast hits to 9851 proteins in 276 species: Archae - 0; Bacteria - 6; Metazoa - 2638; Fungi - 764; Plants - 5094; Viruses - 23; Other Eukaryotes - 1348 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12760.2

Model type
Protein coding
Short Description
Zinc finger, C3HC4 type (RING finger) family protein
Computational Description
Zinc finger, C3HC4 type (RING finger) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR