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12-3292-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23400308 [Map]; Strand: w
      • AT3G63350.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-3292-1 - 5-prime edge 
    NGNNGCNCAG CAGATCNGAG CCNATGACNG ANCAGTNCCT TGATGGGTCA 
    ANAGGGACCG TTCTCAAAAG CATCANGCGA CNAACCTCCT CTTCTTCCCC 
    TCCTTCGCTT AACTACTCTC AGTCTCAGCC CGAGGCTCAT GACCCAGGCG 
    TCGAGCTTCC GCAGCTCCGA GAAGAGAGGC ATGTCCTAAT GATGGAGATC 
    TCGACGCTCA GACAGGAGGA GCAAAGAGCG AGAGGCTACG TCCAAGCCAT 
    GGAGCAGAGG ATTAATGGAG CAGAGAAGAA ACAGAGGCAT ATGATGTCCT 
    TCTTGATGCG TGCGGTGGAG AATCCTTCCC TTCTGCAGCA GATTTTCGAG 
    CAGAAGAGAG ACCGAGAGGA GGCCGCGATG ATTGATCAGG CTGGCTTGAT 
    CAAAATGGAA GAGGTGGAGC ACCTGTCGGA GCTGGAGGCT CTGGCGCTTG 
    AGATGCAAGG ATATGGACGG CAACGGACTG ATGGTGTGGA GAGGGAGCTT 
    GACGACGGGT TTTGGGAAGA GTTACTCATG AACAATGAAA AGTCCGACGA 
    AGAAGAGGCG AATGTGAAGC AAGATTAGGT TTTATGGGTT CATGTCCGAA 
    AAAGAAAAGT ACAAGTATCG ATCAATCAAA GCTAATGAAG ACTGAGAACC 
    AACAAAATGA ACTATGTGTN TAATATATAG GGGTACATTA CACCACAACG 
    TNTTCTGTNC CATTTTTTAA GAATTTTGGG TTCCTTTTAT TNGATNTTTA 
    AT

AT3G63350.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Curator Summary
member of Heat Stress Transcription Factor (Hsf) family
Computational Description
AT-HSFA7B; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to high light intensity, response to heat, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root, pedicel, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A7A (TAIR:AT3G51910.1); Has 2113 Blast hits to 2100 proteins in 228 species: Archae - 0; Bacteria - 6; Metazoa - 325; Fungi - 481; Plants - 785; Viruses - 0; Other Eukaryotes - 516 (source: NCBI BLink).
Link
InterPro Scan - TAIR