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11-2413-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16869407 [Map]; Strand: c
      • AT2G40400.1 - [+] show detail - Protein of unknown function (DUF399 and DUF3411)
        Distance: 0; Region: exon1 (CDS)
      • AT2G40400.2 - [+] show detail - Protein of unknown function (DUF399 and DUF3411)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-2413-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAGG AAGATGATTG AGAAGCCAAG AGCCCACCAT 
    TGGTCGTGGG CTTCATTGGT ACACAGTCAG CTTTTTGCAT TGCTCTAGAG 
    CAACAAATAG AGACTTTTCA TTTTATTTTA TTGCCATCTC TTGTGTGGTT 
    CTCCAATTTT CAAAAATAAA AAAAAACTTC TACTACATGA TTTTATTTAT 
    GTTAGATCCA CCAAATTATA CGTATAATAA TGTTGAAAAA TAAATTTATG 
    GATAACAACA ACGGAAAAAA ACTATGGACT ATATACGACT TTGATATTCA 
    TATATACAAA ACTTTTTTTC TTTATGTCGG NGAAGTCATT ANAAAAGCAC 
    AATACTGTAT TTTCTAAATT CAATAATTCC ATCATAAGTA TTATTTTACA 
    AACTTTACTG AAAAAAGCAA CAAACTAGGG GAATATTTTG CTTAGGGTGA 
    AAGTAANAAA AGAAATATCT AAGGAAGATT GAGGTAAAGC ATCTCCTTAA 
    ATTCCAACTT TCTAGTATCA CTATAAAAAG TATGATGCTT GTANGCCAAT 
    AAGTCAACCC AACGCAACCT TAACCTCAAC TCCATTACTT TCCCAATANC 
    CGTTTTATCA ACTTTCCANA AAACGCTTTG CCATAACTTT TTCTGNAAAC 
    ACAACTCCTC CTTGGTTNGN GAACGGNCTA AACNCCCCCG GGTCCCGGTN 
    TTGGAACAAG CCNGAGGGTN ATCNTCGNAA CTTTCNANGG TTAAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16898258 [Map]; Strand: c
      • AT2G40460.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-2413-1 - 3-prime edge 
    CCTTGACGGC TGTTTGACAG CACTGATGTG ACATCTAAGT AGAAATATAT 
    AGGCCTTGTT TAGTTGTTTT TATAGGCCAT GTTTCTATAA GTAAGAGTCA 
    TTAATTAGTG TTAGTAAAGT GATGTTAGGT GTTTCTTACA AAACTTGGGT 
    ACGTTTCTAA TCATTTGGCA CTGATAAGTC TGAGATGATT AGATTTAAAA 
    TAACCACAGG CTTAAT

AT2G40400.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF399 and DUF3411)
Computational Description
Protein of unknown function (DUF399 and DUF3411); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF399 (InterPro:IPR007314), Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT3G56140.1); Has 496 Blast hits to 496 proteins in 118 species: Archae - 0; Bacteria - 198; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G40400.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF399 and DUF3411)
Computational Description
Protein of unknown function (DUF399 and DUF3411); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF399 (InterPro:IPR007314), Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT3G56140.1); Has 496 Blast hits to 496 proteins in 118 species: Archae - 0; Bacteria - 198; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G40460.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 3 (TAIR:AT5G46050.1); Has 7555 Blast hits to 7238 proteins in 1401 species: Archae - 0; Bacteria - 3710; Metazoa - 634; Fungi - 431; Plants - 2228; Viruses - 0; Other Eukaryotes - 552 (source: NCBI BLink).
Link
InterPro Scan - TAIR