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11-0561-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::semi-sterile)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 69293 [Map]; Strand: c
      • AT2G01050.1 - [+] show detail - zinc ion binding;nucleic acid binding
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0561-1 - 5-prime edge 
    CGTATAACTA CTATCATCGG TGTTTACTCA TGGAGATTGC TCGTGGGTTG 
    GGTAGACCAC TCAAGGTTGA TATGAATACG ATTAACTTTG ACAAGGGTCG 
    TTTTGCTCGA GTGTGTATTG AGGTTAACCT TAGCAAAACC TTTAAAAGGG 
    ACTGTGCTAA TCAATGGGGA TAGATACTTC GTAGCATATG AAGGACTGTT 
    TAAAATCTGT TCTTCGTGTG GTATTTACGG TCATTTGGTT CATTCTTGTC 
    CAAGAAATGT GGTGGTGAAA GTTTCGGCTG GGGCAGAGAC GGTTACGGAT 
    AGAGCTGTGA TGCCTGTTGG GATGGAGGGA GATGACGGGT TCACAGTGGT 
    TCAACGCTCC GCTAGACGGC CGGCGGCACC GGTGCANAAN ATGGTGTTTG 
    CGGTGGGTGC GTCTGGTGGT AGGTCAAAAC AGAGGTTAAG GGAACTCCCT 
    AAAAATCAGG GGGTGGATCT CGCAAATCGA TTTGGTGGAT TGGATGGTAA 
    TGGTGATTTG CCTGATTTAA GGGAAGTTGC CATTACAGAA GGGCCAAATA 
    AGGAAAATGA ATATCATGGG AGGAATGTGG GGAAGGTTAA GGGTGTCCCA 
    CTANTTAAGG AAGCTCGGGG TTNTACCCAN ATGGAAAAAG GGAAAGGCNG 
    GANTNAAGGN GGNTTTAATG GAANCNNNNG NANGGATAAN GCTTTGNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 69409 [Map]; Strand: c
      • AT2G01050.1 - [+] show detail - zinc ion binding;nucleic acid binding
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0561-1 - 3-prime edge 
    GTTATACGGG ATATTCGATA ATCTAACCCA CACCGGGGTA GTCACAATAT 
    CATCCCTCAA CGGATCAAAC CTTGACGACC AGTCTTGGAC CAACAGATAG 
    TTCCCAAAAA CTCTCCATGG GCCTCCGGTT AAAGCAGCCA TATACTCCTC 
    TTCCAGTTCA AACCTAATCA TGAAAAACTG GCGGGGCAAA TCCATCACTG 
    TCATCACTCC CGACGGTTTC CAAAGCTCCC TTAGCTTGCG ATTCAACACC 
    GAGATCGGAA TCTGGCTCCC AAGCACCTTC ACTATCATAC ACTTCTTCCA 
    AAGCCCATTC ATGGCTTCCA ACACCTCCTC ACCAATGGTA ATAACTGGCT 
    CCTCGTCCTC ACCATCTAGA AACTCCAGCC TCACCCGCTC CCTCACAAAC 
    TCATCATCAA TCACGTCTTC TGGTTTCAAG ATACCTCCCC CAGCACTACC 
    CTTCACTTTC GTAGCCCACG ACTCCAACTT ATCCGGAGGA TC

AT2G01050.1

Model type
Protein coding
Short Description
zinc ion binding;nucleic acid binding
Computational Description
zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31430.1); Has 369 Blast hits to 365 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 367; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR