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RIKEN Plant Science Center

RIKEN Genomic Sciences Center

Promoter Search Result

There are 26 Results.
IdentifierCis AccessionDescrip tion
 SV40ENHANCOREELEMENTS000168SV40 enhancer core element;
 S1FBOXSORPS1L21S000223"S1F box" conserved both in spinach (S.o.) RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activity (Lagrange et al., 1993); See S000211 (SITE1SORPS1), S000215 (S1FSORPL21);
 S1FSORPL21S000215"S1F binding site" ("S1 site") in spinach (S.o.) RPL21 gene encoding the plastid ribosomal protein L21; Negative element; Might play a role in downregulating RPL21 promoter activity (Lagrange et al., 1993); See S000211 (SITE1SORPS1), S000166 (S2FSORPL21);
 S2FSORPL21S000166"S2F binding site" ("S2 site") in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site (Lagrange et al., 1997); For a compilation of related GT elements and factors, see Villain et al. (1996);
 SARECAMVS000156Salicylic acid responsive element found in CaMV 35S promoter; Identical to as-1; Binding with ASF-1 (Activation Sequence Factor-1); See AS1 (S000023);
 SE1PVGRP18S000288"SE1 (Stem element 1)" found in the bean (P.v.) grp1.8 gene promoter; Located between -121 and -94; Enhances the expression strongly but unspecifically; See S000289, S000101 (SE2);
 SE2PVGRP1S000101"SE2 (stem element 2)" of bean (P.v.) GRP1.8 gene; part of SE2 element;
 SEBFCONSSTPR10AS000391Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element; W=A/T;
 SEF1MOTIFS000006"SEF1 (soybean embryo factor 1)" binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene; W=A/T;
 SEF3MOTIFGMS000115"SEF3 binding site"; Soybean (G.m.) consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4;
 SEF4MOTIFGM7SS000103"SEF4 binding site"; Soybean (G.m.) consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); "Binding with SEF4 (soybean embryo factor 4)"; R=A/G;
 SGBFGMGMAUX28S000287bZIP proteins SGBF-1 and SGBF-2 binding site in soybean (G.m.) GmAux28 gene promoter; see S000042;
 SITE1SORPS1S000211Site 1 in the spinach (S.o.) rps1 promoter; S1F binding site; Nuclear genes encoding plastid ribosomal proteins are more highly expressed in leaves than in root; Involved in leaf-specific induction; Seems to be light-independent; Involved in negative regulation; Related to the light-responsive Box II of the pea rbcs-3A promoter; Related to GT elements; For a compilation of related GT elements and factors, see Villain et al. (1996); See S000215 (S1FSORPL21); S1 box=ATGGTA;
 SITE3SORPS1S000212Site 3 of spinach (S.o.) rps1 promoter; S1F binding site; For a compilation of related GT elements and factors, see Villain et al. (1996);
 SITEIIAOSPCNAS000216"Site IIa" of rice (O.s.) PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2 (Kosugi and Ohashi, 1997); Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See S000026 (AUXREPSIAA4);
 SITEIIBOSPCNAS000217"Site IIb" of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2 (Kosugi and Ohashi, 1997); Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See S000026 (AUXREPSIAA4);
 SITEIOSPCNAS000224"Site I" of rice (O.s.) PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activation;
 SP1SV40S000172SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA);
 SP8BFIBSP8AIBS000183One of SPBF binding site (SP8a); Found at -155 of gSPO-A1 (sporamin) gene, and also at -880 of gB-Amy (beta-amylase) gene in sweet potato (I.b.); SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8BIB (S000184); SP8BF activity is also found in tobacco; "SP8a" found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b; See S000184;
 SP8BFIBSP8BIBS000184One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB (S000183); SP8BF activity is also found in tobacco; "SP8b" found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b; See S000184;
 SPHCOREZMC1S000154Core of Sph element; Core motif of Sph element in maize (Z.m.) C1 gene to which maize VP1 (viviparous 1) protein binds; VP1-responsive element; see RYREPEAT4 (S000010); VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response;
 SPHZMC1S000293"Sph element" found in the maize (Z.m.) C1 gene promoter; Located between -142 and -132; Essential for VP1 activation; See S000154, S000294; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response;
 SRENTTTO1S000271Stress responsive element (SRE) in tobacco (N.t.) retrotransposon Tto1; A 13 bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1; Involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors; Contains a conserved motif, Box L;
 SURE1STPAT21S000186Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21 (S000185); Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato (S.t.);
 SURE2STPAT21S000185Sucrose Responsive Element 2 (SURE2); A motif conserved among genes regulated by sucrose; See also SURE1ST (S000186); Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato (S.t.);
 SV40COREENHANS000123"SV40 core enhancer"; Similar sequences found in rbcS genes; W=A/T;

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Cis Element Data from PLACE