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RIKEN Plant Science Center

RIKEN Genomic Sciences Center

Promoter Search Result

There are 23 Results.
IdentifierCis AccessionDescrip tion
 RAV1AATS000314Binding consensus sequence of Arabidopsis (A.t.) transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; See S000315(CACCTG);
 RAV1BATS000315Binding consensus sequence of an Arabidopsis (A.t.) transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; See S000314(CAACA);
 RBCSBOX2PSS000094"rbcS box II"; 5' upstream region (-151) of pea (P.s.) rbcS gene; Binding with trans factor GT-1; one of GT-1 boxes; For a compilation of related GT elements and factors, see Villain et al. (1996); GT-1 may act as a molecular switch modulated by calcium-dependent phosphorylation and dephosphorylation in response to light signals;
 RBCSBOX3PSS000095"rbcS box III"; 5' upstream region (-114) of pea (P.s.) rbcS gene; binding with trans factor GT-1; one of GT-1 boxes; For a compilation of related GT elements and factors, see Villain et al. (1996);
 RBCSCONSENSUSS000127"rbcS general consensus sequence"; AATCCAA or AATCCAAC;
 RBCSGBOXPSS000096"rbcS G-box"; 5'upstream region (-211) of pea rbcS gene; binding with trans factor GBF (CG-1); Light-responsiveness;
 RBENTGA3S000358"rbe (RSG binding element)" found in the tobacco (N.t.) GA3 gene promoter; Binding site of RSG (Repression of shoot growth); RSG is a bZIP transcriptional activator; RSG regulates the morphology of plants by controlling the endogenous amounts of GAs;
 RE1ASPHYA3S000195RE1 (putative repressor element) responsible for Pfr-directed repression of oat (A.s.) phyA3 phytochrome gene; Also found in pea AS1 (asparagine synthetase) gene (Ngai, Tsai, Coruzzi: Plant J 12:1021-1234 (1997));
 REALPHALGLHCB21S000362"REalpha" found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation; See S000363;
 REBETALGLHCB21S000363"REbeta" found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulation; See S000362;
 REGION1OSOSEMS000300"region 1" ABRE-like sequence found in rice (O.s.) Osem gene promoter; Important for regulation by ABA; See S000102, S000299; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;
 RGATAOSS000191R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS (S000188), RNFG2OS (S000189), and ABFOS (S000190);
 RNFG1OSS000188RNFG1 binding site; Box I; RNFG1 is one of two Rice Nuclear Factors required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); Box I is found at -3 to +8 of RTBV promoter; See also RNFG2OS (S000189);
 RNFG2OSS000189RNFG2 binding site; Box II; RNFG2 is one of two Rice Nuclear Factors required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); Box II is found at -53 to -39 of RTBV promoter; See also RNFG1OS (S000188);
 ROOTMOTIFTAPOX1S000098Motif found both in promoters of rolD;
 RSEPVGRP1S000099"RSE (root-specific element)" of bean (P.v.) GRP1.8 gene; consensus sequence;See also S000288 and S000289;
 RSEPVGRP18S000289"RSE (root-specific element)" found in bean (P.V.) grp1.8 gene promoter; Located at -98 to -73; Required also for vascular-specific expression in stem; See S000288, S000099;
 RSRBNEXTAS000243"RSR (root specific region)" in promoter region of Brassica napus (B.n.) extA extensin gene;
 RYREPEATGMGY2S000105"RY repeat motif (CATGCAT)"; Present in the 5' region of the soybean (G.m.) glycinin gene (Gy2);
 RYREPEAT4S000010"RY repeat motif"; "Sph element"; seed expression; ABA; Gene: maize C1, wheat Em, rice rab16A, maize Rab17; Transacting factor: VP1 (maize C1); See S000105 RYREPEAT2 (CATGCAT); The RY sequence motif does not play a major role in VP1 or ABA regulation of Em gene in protoplast; VP1 gene is specifically required for expression of the maturation program in seed development;
 RYREPEATBNNAPAS000264"RY repeat" found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus (B.n.); Found between -78 and -50; Required for seed specific expression; See S000262, S000263; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE;
 RYREPEATLEGUMINBOXS000100"RY repeat (CATGCAY)" or legumin box found in seed-storage protein genes in legume such as soybean (G.m.);
 RYREPEATVFLEB4S000102"RY repeat motif"; CATGCATG; quantitative seed expression; Gene: Vicia faba LeB4; Soybean glycinin (Gy2); other dicot and monocot seed protein genes; transacting factor: unknown; "Sph box" found in rice (O.s.) Osem gene promoter; enhances the activation by VP1; See S000010, S000299, S000300; Binding site of Arabidopsis B3-domain-containing transcription factor FUS3; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;

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Cis Element Data from PLACE