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RIKEN Plant Science Center

RIKEN Genomic Sciences Center

Promoter Search Result

There are 32 Results.
IdentifierCis AccessionDescrip tion
 C1GMAUX28S000326"C1"; DNase I protected sequence found in the soybean (G.m.) auxin responsive gene, Aux28, promoter; Located between -463 and -448; A/T-rich sequence;
 C1MOTIFZMBZ2S000237"C1-motif"; Similar to Myb-box; Found in the promoter region of maize (Z.m.) Bronze2 ( glutathione S-transferase) gene; C1 binding; C1-motif and R-motif were shown to be important for full R and C1 activation of the Bz2 promoter; S=C or G;
 C2GMAUX28S000327"C2"; DNase I protected sequence found in the soybean (G.m.) auxin responsive gene, Aux28, promoter; Located between -552 and -553; Contains (ATT)4 sequence;
 C8GCARGATS000410Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core; See also S000316, S000347, S000348, S000404;
 CAATBOX1S000028"CAAT promoter consensus sequence" found in legA gene of pea;
 CAATBOX2S000029"CAAT box" found in the 5' upstream region (-80) of many eukaryotic genes; GGC(or T)CAATCT;
 CACGCAATGMGH3S000368Sequence found in D4 element in Soybean (G.m.) GH3 gene promoter; Showed constitutive activity with TGTCTC element (See S000270); Confers auxin inducibility; Binding site of nuclear protein; See also S000369;
 CACGTGMOTIFS000042"CACGTG motif"; "G-box"; Found in light-responsive genes, and in other unrelated genes; Binds with GBF (G box of rbcS), with GT-1 or with cG-1 (chs); Factors groups 1, 2 and 3 have affinity for C-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; See S000345; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis;
 CANBNNAPAS000148Core of "(CA)n element" in storage protein genes in Brasica napus (B.n.); embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor;
 CAREOSREP1S000421"CAREs (CAACTC regulatory elements)" found in the promoter region of a cystein proteinase (REP-1) gene in rice;
 CARG1ATAP3S000347"CArG1" found in the Arabidopsis (A.t.) APETALA3 (AP3) gene promoter; Binding site of AP3/PI heterodimer; Binding site of AP3/PI heterodimer; Binding site for a positively acting factors; MADS domain transcription factors bind with a consensus sequence called the CArG box; See S000348, S000349;
 CARG2ATAP3S000348"CArG2" found in the Arabidopsis (A.t.) APETALA3 (AP3) gene promoter; Mutations in CArG2 result in a decrease in the expression in petals, but the expression pattern in stamens is unchanged; See S000348, S000349;
 CARG3ATAP3S000349"CArG3" found in the Arabidopsis (A.t.) APETALA3 (AP3) gene promoter; Binding site of AP3/PI heterodimer; Binding site for a negatively acting factors; Binding sequence of Arabidopsis (A.t.) MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS; AP1, AG, and AP3-PI complexes induce similar conformational changes on a CArG-box sequence; See S000347, S000348, S000338;
 CARGATCONSENSUSS000404"CArG consensus" sequence found in the promoter of Arabidopsis (A.t.) SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO); See also S000342 (AGAMOUSATCONSENSUS); W=A/T;
 CATATGGMSAURS000370Sequence found in NDE element in soybean (G.m.) SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness; See S000359, S000360;
 CCA1ATLHCB1S000149CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana (A.t.); Related to regulation by phytochrome;
 CCAATBOX1S000030Common sequence found in the 5'-non-coding regions of eukaryotic genes; "CCAAT box" found in the promoter of heat shock protein genes; Located immediately upstream from the most distal HSE of the promoter; "CCAAT box" act cooperatively with HSEs to increase the hs promoter activity;
 CCTCGTGTCTCGMGH3S000369Sequence found in D1 element in Soybean (G.m.) GH3 gene promoter; Showed constitutive activity with TGTCTC element (See S000270); Confers auxin inducibility; Binding site of nuclear protein; See also S000368;
 CDTDREHVCBF2S000411Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; DNA binding is regulated by temperature;
 CE3OSOSEMS000282"CE3 (Coupling Element 3)" found in the promoter of the rice (O.s.) Osem gene; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 (S000281) are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;
 CELLCYCLESCS000031"cell cycle box" found in URS2 (-940/-200) of HO gene of S.cerevisiae; cell-cycle-specific activation of transcription;
 CEREGLUBOX1PSLEGAS000032"cereal glutenin box" in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element ("-300 element");
 CEREGLUBOX2PSLEGAS000033"cereal glutenin box" in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element ("-300 element");
 CEREGLUBOX3PSLEGAS000034"cereal glutenin box" in pea (P.s.) legumin gene (legA); sequence homologous to the cereal glutenin gene control elements;
 CGACGOSAMY3S000205"CGACG element" found in the GC-rich regions of the rice (O.s.) Amy3D and Amy3E amylase genes, but not in Amy3E gene; May function as a coupling element for the G box element;
 CGF1ATCAB2S000213CGF-1 binding site in the Arabidopsis (A.t.) cab2 gene promoter; CGF-1=CAB GATA Factor 1; Found at -74 to -42; Contains a highly conserved, repeated GATA motif termed I-box (see S000124, S000199); For GATA motif, see S000039; The binding specificity of CGF-1 appears to be related to GT-family of DNA-binding proteins; For a compilation of related GT elements and factors, see Villain et al. (1996);
 CGTGTSPHZMC1S000294Sequence found in the maize (Z.m.) C1 gene promoter; Located between -147 to -132; Containing Sph element; Required for ABA responsiveness; See S000154, S000293;
 CIACADIANLELHCS000252Region necessary for circadian expression of tomato (L.e.) Lhc gene;
 CONSERVED11NTZMATP1S000301Conserved 11 nt sequence found in the maize (Z.m.) mitochondrial atp1 promoter; Located between -5 and +6; Essential for the expression;
 CPRFPCCHSS000333"ACE"; Binding site of parsley (P.c.) bZIP factors CPRF1 and 4; Found in the parsley (P.c.) light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo;
 CPRFPCCHSS000313"BoxII"; Binding site of CPRF-1, -2, and -3 (Common Plant Regulatory factor); CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley;
 CYTOSITECSHPRAS00026113 bp sequence of unknown function found in cucumber (C.s.) hydroxypyruvate reductase (hprA) gene promoter; Protein binding site; Required for cytokinin responsiveness; See S000260 (AS1LIKECSHPRA) found in the same region; Also involved in light responsiveness; see also S000260;

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Cis Element Data from PLACE