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Promoter Search Result

There are 81 Results.
IdentifierCis AccessionDescrip tion
 AACACOREOSGLUB1S000353Core of AACA motifs found in rice (O.s.) glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter; See also S000045, S000181, S000276;
 AACAOSGLUB1S000276"AACA motif" found in GluB-1 gene in rice (O.s.); Required for endosperm-specific expression; Highly conserved in the 5'-flanking region of glutelin genes; See S000277;
 AAGACGTAGATACL12S000344Sequence found in Arabidopsis (A.t.) acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT);
 ABADESI1S000007Responsive to ABA and desiccation; "Motif I" of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1;
 ABADESI2S000008Synthetic element (hex-3) related to response to ABA and to desiccation; seed expression; Gene: synthetic; hex-3, mutant of hex-1 sequence from wheat histone H3 promoter; transacting factor: bZIP ?;
 ABAREG2S000009Motif related to ABA regulation; Gene: sunflower helianthinin; transacting factor: bZIP ?
 ABASEED1S000011ABA regulation; seed expression; Gene: carrot Dc3; Transacting factor: bZIP ?; Contains ACGT motif;
 ABFOSS000190ABF (as-1-like box binding factor) binding site; as-1-like (ASL) box is found at -98 to -79 of RTBV (rice tungro bacilliform virus) promoter; ASL box is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS (S000188), and RNFG2OS (S000189); See as-1 (S000023);
 ABRE2HVA1S000134ABA responsive element, ABRE2, found in barley (H.v.) HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response;
 ABRE2HVA22S000117"ABRE2" of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; see S0118 (ABRE3 of HVA22 gene); see CE1 (coupling element 1 = TGCCACCGG); See S000014;
 ABRE3HVA1S000135ABA responsive element, ABRE3, found in barley (H.v.) HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response;
 ABRE3HVA22S000118"ABRE3" of barley HVA22 gene; Newly designated "A3" by Shen et al., Plant Cell 8:1107 (1996); G-box; component of ABA response complex in HVA22 gene; see S0117 (ABRE2 of HVA22 gene); see CE1 (coupling element 1 = TGCCACCGG); See S000014; ABA response complex 1(ABRC1)=A3(previously designated ABRE3)+CE1 (Shen et al., Plant Cell 8:1107(1996));
 ABRE3OSRAB16S000120ABA-responsive element of rice (O.s.) rab16 and alpha-amylase genes;
 ABREA2HVA1S000140A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3; CE1=S000014; A3=ABRE3=S000118; See S000118;
 ABREATCONSENSUSS000406ABA-responsive elements (ABREs) found in the promoter of ABA and/or stress-regulated genes; ABFs, a family of ABRE binding factors; ABF3 and ABF4 function in ABA signaling; Y=C/T;
 ABREATRD22S000013"ABRE (ABA responsive element)" in Arabidopsis (A.t.) dehydration-responsive gene rd22; R=A/G; Y=C/T;
 ABREAZMRAB28S000218ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28 (Busk & Pages, 1997); Maize rab28 is ABA-inducible in embryos and vegetative tissues;
 ABREBNNAPAS000145ABRE of napA storage-protein gene of Brassica napus (B.n.); ABA responsive element; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE; B3 domain of ABI3 interacts with the RY/G complex;
 ABREBZMRAB28S000219ABA-responsive element (ABRE B) found at -105 to -96 in maize (Z.m.) rab28 (Busk & Pages, 1997); Maize rab28 is ABA-inducible in embryos and vegetative tissues;
 ABRECE1HVA22S000014CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1;
 ABRECE3HVA1S000141CE3 (coupling element 3) of ABRC3 in barley HVA1 gene; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3; CE1=S000014; A3=ABRE3=S000118; See S000118;
 ABRECE3ZMRAB28S000221CE3 (coupling element 3) in maize (Z.m.) rab28 gene promoter; ABA responsive element; stress response; Similar (10 of 12) to CE3 in A1 gene of barley; See S000141 (ABRECE3HVA1); Found at -126 to -115;
 ABREDISTBBNNAPAS000262"dist B (distal portion of B-box)" found in napA gene of Brassica napus (B.n.); Shows similarity to ABRE; Found between -148 and -124; Required for seed specific expression and ABA responsiveness; See S000263, S000264; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE;
 ABRELATERD1S000414ABRE-like sequence (from -199 to -195) required for etiolation-induced expression of erd1 (early responsive to dehydration) in Arabidopsis;
 ABREMOTIFAOSOSEMS000299"motif A" ABRE-like sequence found in rice (O.s.) Osem gene promoter; Essential for activation by VP1; Important for regulation by ABA; See S000102, S000300; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;
 ABREMOTIFIIIOSRAB16BS000291"Motif III" found in the promoter of rice (O.s.) rab16B gene; Motif I (S000290) and motif III are both required for ABA responsiveness; However, each can substitute for the other;
 ABREMOTIFIOSRAB16BS000290"Motif I" found in the promoter of rice (O.s.) rab16B gene; Motif I and motif III (S000291) are both required for ABA responsiveness; However, each can substitute for the other; See S000019, S000120;
 ABREOSRAB21S000012"ABA responsive element (ABRE)" of wheat Em and rice (O.s.) rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene; S=C/G;
 ABREOSRGA1S000139ABRE (ABA responsive element) in rice (O.s.) RGA1 encoding a G protein alpha subunit;
 ABRETAEMS000015"ABRE (ABA responsive element)" found in wheat (T.a.) Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGC; See S000119 EMBP1;
 ABREZMRAB28S000133ABRE; ABA and water-stress responses; Found in maize (Z.m.) rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; "ABRE2"; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;
 ACEATCHSS000355"ACEAtCHS (ACGT containing element)" found in the LRU (light-responsive unit) in Arabidopsis (A.t.) chalcone synthase (CHS) gene promoter; Required for UV-B and UV-1/blue light responsiveness; See S000356; Transcriptional repression by AtMYB4 controls production of UV-protecting sun screens in Arabidopsis; AtMYB4 mutant shows enhanced levels of sinapate ester in leaves and tolerance of UV-B irradiation; AtMYB4 expression is downregulated by exposure to UV-B light;
 ACGTABOXS000130"A-box" according to the nomenclature of ACGT elements by Foster et al. (FASEB J 8:192-200 (1994)); One of ACGT elements; Found in ocs gene; RITA-1 binding site (Izawa et al. 1994); "G motif" by Toyofuku et al. (1998); G motif and TATCCAY motif (a GATA motif as its antisense sequence; see S000256) are responsible for sugar repression (Toyofuku et al. 1998); See S000346;
 ACGTABREMOTIFA2OSEMS000394Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; See S000281; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;
 ACGTABREMOTIFAOSOSEMS000281"ABRE motif A" found in the promoter of the rice (O.s.) Osem gene; ACGT-containing ABRE; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 (S000282) are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;
 ACGTATERD1S000415ACGT sequence (from -155 to -152) required for etiolation-induced expression of erd1 (early responsive to dehydration) in Arabidopsis;
 ACGTCBOXS000131"C-box" according to the nomenclature of ACGT elements by Foster et al. (FASEB J 8:192-200 (1994)); One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box (Izawa et al. J Mol Biol. 230:1131-1144 (1993)); RITA-1 binding site (Izawa et al. 1994);
 ACGTOSGLUB1S000278"ACGT motif" found in GluB-1 gene in rice (O.s.); Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; See S000276, S000277; See S000019;Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; See S000353, S000354;
 ACGTROOT1S000016"ACGT motif" related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1 ?; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA;
 ACGTSEED2S000018"ACGT motif" related to seed expression; Gene: French bean phaseolin; transacting factor: 02;
 ACGTSEED3S000019"ACGT motif" related to seed expression; Gene: synthetic; wild-type motif (Iwt) containing G-box-related sequence; transacting factor: bZIP ?; A tobacco bZip transcription activator (TAF-1) binding site;
 ACGTTBOXS000132"T-box" according to the nomenclature of ACGT elements by Foster et al. (FASEB J 8:192-200 (1994)); One of ACGT elements; See also ACGTABOX (S000130), ACGTCBOX (S000131), and CACGTGMOTIF (S000042);
 ACIIIPVPAL2S000194ACIII element found at -246 to -238 of bean (P.v.) PAL2 promoter; ACIII element is required for vascular-specific gene expression; See also ACIPVPAL2 (S000192) and ACIIPVPAL2 (S000193); Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissu-specific expression of pAL2 gene;
 ACIIPVPAL2S000193ACII element found at -131 to -120 of bean (P.v.) PAL2 promoter; ACII element is required for vascular-specific gene expression; See also ACIPVPAL2 (S000192) and ACIIIPVPAL2 (S000194); Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissu-specific expression of pAL2 gene;
 ACIPVPAL2S000192ACI element found at -83 to -74 of bean (P.v.) PAL2 promoter; AC-rich element; ACI element is required for vascular-specific gene expression; See also ACIIPVPAL2 (S000193) and ACIIIPVPAL2 (S000194); Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissue-specific expression of pAL2 gene;
 AGAMOUSATCONSENSUSS000342Binding consensus sequence of Arabidopsis (A.t.) AGAMOUS MADS domain; MCM1 binding-sites in a-mating-type-specific promoters of Saccharomyces cerevisiae show similarities with the binding-site sequence of the AGAMOUS MADS domain; See S000316; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development; See S000338;
 AGATCONSENSUSS000316Binding consensus sequence for the product of the Arabidopsis (A.t.) floral homeotic gene AGAMOUS (AG); AG protein contains a region similar to the DNA binding domain of SRF and MCM1; The consensus sequence contains a CArG box; AG protein is a putative transcription factor for floral genes; H=A/T/C; W=A/T; See S000342; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development; See S000338;
 AGCBOXNPGLBS000232"AGC box" repeated twice in a 61 bp enhancer element in tobacco (N.p.) class I beta-1,3-glucanase (GLB) gene; See S000036, S000089; "GCC-box"; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; Found in the promoter of tobacco (N.s.) Osmotin-like protein (OLP) genes; EREBP2 binding site; Conserved in most PR-protein genes;
 AGL1ATCONSENSUSS000338Binding consensus sequence of Arabidopsis (A.t.) AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; See S000339; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structures;
 AGL2ATCONSENSUSS000339Binding consensus sequence of Arabidopsis (A.t.) AGL2 (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a dimer; See S000338;
 AGL3ATCONSENSUSS000343Binding consensus sequence of Arabidopsis(A.t.) AGL3; AGL3 is MADS-box domain protein; AGL3 is expressed in all above-ground vegetative organs; AGL3 may be involved the transcriptional regulation of genes;
 AGTACSAOS000258"AGTA repeat" in pumpkin (C.s.) ascorbate oxidase gene (AO) promoter; Found in silencer region; AOBP (AGTA repeat binding protein) binding site; AOBP protein has DOF domain; Required for repression of expression of AO gene;
 ALF1NTPARCS000238"ALF-1 (as-1-like sequence binding factor)" binding site found in tobacco (N.t.) parC gene; Found in auxin-responsive regions; as-1-like sequences in parA, parB and parC bind with ASF-1, ALF-2, and ALF-1, respectively; See S000190 (ABFOS);
 ALF2NTPARBS000239"ALF-2 (as-1-like sequence binding factor 2)" binding site found in tobacco (N.t.) parB gene; Found in auxin-responsive regions; as-1-like sequences in parA, parB and parC bind with ASF-1, ALF-2, and ALF-1, respectively; See S000190 (ABFOS);
 AMMORESIIUDCRNIA1S000374Motifs (IIU and IID) found in the Chlamydomonas (C.R.) Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activation; W=T/A;
 AMMORESIVDCRNIA1S000375Motif (IVD) found in the Chlamydomonas (C.R.) Nia1 gene promoter; Located between -51 and -42; Involved in Nia1 transcription repression;
 AMMORESVDCRNIA1S000376Motif (VD) found in the Chlamydomonas (C.R.) Nia1 gene promoter; Located between -33 and -8; Involved in Nia1 transcription activation;
 AMYBOX1S000020"amylase box"; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barley;
 AMYBOX2S000021"amylase box"; "amylase element"; Conserved sequence found in 5'upstream region of alpha-amylase gene of rice, wheat, barley; "amylase box" (Huang et al. 1990); "amylase element" (Hwang et al., 1998);
 ANAEROBICCISZMGAPC4S00035020 bp anaerobic cis-regulatory sequence found in the maize (Z.m.) GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter; Located between -286 and -266; Required for anaerobic gene expression in transgenic tobacco; See S000351;
 AP1SV40S000171AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA);
 AP2SV40S000170AP-2 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA);
 AP3SV40S000169AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2;
 ARE1S000022"ARE (antioxidant response element)"; antioxidant response element of rat glutathione S-transferase Ya subunit, and rat NAD(P)H:quinone reductase genes;
 ARE2S000173"ARE (antioxidant response element)"; antioxidant response element of mouse metallothionein-I (MT-I) gene; Consensus sequence of mouse MT-I and MT-II genes, and MT genes isolated from rat, hamster, human, sheep, chicken, Drosophila melanogaster, C. elegans; See ARE1 (S000022);
 ARECOREZMGAPC4S000393Putative binding site for a Myb found in the promoter of maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene; Essential for anaerobic induction;
 ARFATS000270ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana (A.t.); AuxRE; More than 10 ARFs identified in A. thaliana; See S000337; Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean (G.m.) SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness; See S000359, S000360; Found in D1 or D4 element in Soybean (G.m.) GH3 promoter;
 AS1CAMVS000023"as-1 (activation sequence 1)" in CaMV 35S promoter; from -85 to -58 (subdomain AI); Binding with ASF-1 (activation sequence factor 1) from pea and tobacco; Expression in root and leaf;
 AS1LIKECSHPRAS000260as-1-like motif found in cucumber (C.s.) hydroxypyruvate reductase (hprA) gene; Required for cytokinin responsiveness; Also see S000261 (CYTOSITECSHPRA);
 ASF1ATNOSS000073Tobacco ASF-1 binding site in nopaline synthase (NOS) promoter of Ti-plasmid of Agrobacterium tumefaciens (A.t.); From -131 to -111; See S000312; Containing two hexamer motifs; Essential for the nos promoter activity;
 ASF1MOTIFCAMVS000024"ASF-1 binding site" in CaMV 35S promoter; ASF-1 binds to two TGACG motifs; See S000023 (AS1); Found in HBP-1 binding site of wheat histone H3 gene; TGACG motifs are found in many promoters and are involved in transcriptional activation of several genes by auxin and/or salicylic acid; May be relevant to light regulation; Binding site of tobacco TGA1a; TGA1a and b show homology to CREB; TGA6 is a new member of the TGA family; Abiotic and biotic stress differentially stimulate "as-1 element" activity;
 ASF1NTPARAS000240"ASF-1 (as-1 binding nuclear factor)" binding site found in tobacco (N.t.) parA gene; Found in auxin-responsive regions; as-1-like sequences in parA, parB and parC bind with ASF-1, ALF-2, and ALF-1, respectively; See S000190 (ABFOS), S000238 (ALF1NTPARC), S000239 (ALF2NTPARB);
 AT1BOXS000025"AT-1 box (AT-rich element)" found in the promoter region of the genes for tobacco ( N.p.) chlorophyll a/b binding protein (cab) and small subunit of ribulose-1,5-bisphosphate carboxylase (rbcS); Deletion of a region containing the AT-1 site in the tomato RBCS3A gene strongly inhibited reporter gene expression, whereas AT-1 site in N. plumbaginifolia CAB gene (cab-E) is in a negative element (Terzaghi & Cashmore, 1995);
 ATHB1ATCONSENSUSS000317Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; See S000318; W=A/T;
 ATHB2ATCONSENSUSS000318Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); See S000317; S=C/G;
 ATHB5ATCORES000371Consensus binding sequence for Arabidopsis (A.T.) class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins;
 ATHB6COREATS000399Consensus binding sequence for Arabidopsis (A.T.) homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; See S000371;
 ATRICHPSPETES000248A/T-rich sequences found in pea (P.s.) plastocyanin gene (petE) promoter; Act as quantitative enhancer; Found at -289 to -255 of pea PetE gene;
 AUXREPSIAA4S000026"AuxRE (Auxine responsive element )" of pea (P.s.) PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems;
 AUXRETGA1GMGH3S000234"TGA-box #1" in putative auxin-resonsive element (AUXRE) of soybean (G.m.) GH3 promoter; Strong binding site for proteins in plant nuclear extracts;
 AUXRETGA2GMGH3S000235"TGA-box #2" in putative auxin-resonsive element (AUXRE) E1 of soybean (G.m.) GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224; Called G-box by Liu et al. (1997);

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Cis Element Data from PLACE