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RIKEN Plant Science Center

RIKEN Genomic Sciences Center

Alternative splicing events on Arabidopsis thaliana detected on RAFL clones.

  We searched alternative splicing events by mapping RAFL clones to the Arabidopsis thaliana genome. In this result, we got 1,764 TUs having alternatively spliced clones. We searched alternative splicing events divided to five types: exon skip, alternative terminal exon, alternative donor, alternative acceptor and retained intron. In this page, information of alternative splicing can be used.

References

1. Iida K., Seki M., Sakurai T., Satou M., Akiyama K., Toyoda T., Konagaya A., and Shinozaki K. Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences [PubMed]

-List of exon skip type alternative splicing.
-List of alternative terminal exon type alternative splicing.
-List of alternative donor type alternative splicing.
-List of alternative acceptor type alternative splicing.
-List of retained intron type alternative splicing.


-Search TU information by keyword.
Enter keyword(s):

Search from  TUs having alternative splicing events  all TUs


-Blast for TU sequences.